Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs2433594 | chr8:67363241 | C/T | 6.25E-8 | 176 | 14.6 | 17.03 | 3.97 | KM Plot |
| PAAD | rs2447588 | chr11:67407909 | A/G | 4.84E-5 | 171 | 15.38 | 15.67 | 8.75 | KM Plot |
| PAAD | rs2447589 | chr11:67407782 | A/G | 1.45E-5 | 172 | 15.43 | 15.72 | 7.77 | KM Plot |
| PAAD | rs2465983 | chr8:67363612 | A/G | 6.25E-8 | 176 | 14.6 | 17.03 | 3.97 | KM Plot |
| PAAD | rs2471800 | chr21:37022427 | C/T | 2.29E-6 | 178 | 5.52 | 17.4 | 15.13 | KM Plot |
| PAAD | rs2471802 | chr21:37022553 | C/T | 2.29E-6 | 178 | 5.52 | 17.4 | 15.13 | KM Plot |
| PAAD | rs2473375 | chr1:24136545 | C/T | 0.000137 | 171 | 13.13 | 14 | 16.6 | KM Plot |
| PAAD | rs2502986 | chr1:24135292 | G/T | 8.02E-5 | 175 | 13.5 | 13.13 | 16.92 | KM Plot |
| PAAD | rs2509711 | chr11:67407906 | T/C | 1.45E-5 | 172 | 15.43 | 15.72 | 7.77 | KM Plot |
| PAAD | rs2510692 | chr11:74581654 | T/C | 6.4E-5 | 177 | 4.27 | 15.5 | 15.62 | KM Plot |
| PAAD | rs2514027 | chr11:67406302 | G/A | 2.07E-5 | 175 | 15.43 | 15.67 | 7.77 | KM Plot |
| PAAD | rs2555567 | chr8:67362374 | G/T | 6.25E-8 | 176 | 14.6 | 17.03 | 3.97 | KM Plot |
| PAAD | rs2555589 | chr8:67370833 | G/A | 6.25E-8 | 176 | 14.6 | 17.03 | 3.97 | KM Plot |
| PAAD | rs255991 | chr5:94587612 | C/A | 6.97E-5 | 170 | 14.63 | 19.47 | 0.3 | KM Plot |
| PAAD | rs2605620 | chr11:93247646 | C/T | 0.000145 | 174 | 32.6 | 16.05 | 13.13 | KM Plot |